PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0333400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 421aa    MW: 45065.1 Da    PI: 6.8387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0333400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.8e-18235281455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  ORGLA03G0333400.1 235 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 281
                        6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.31E-18226285No hitNo description
SuperFamilySSF474592.22E-21229296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.635231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-15235281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-22235290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDGNARSAAN QTKQIVTDNE LVELLWHNGS VVAQPQAAQA RVVSSSGRGQ SASVLTGDDT  60
ETAAWFPDTL DDALEKDLYT QLWRSVTGDA FPAAAAAGPS SHHAPPPDLP PPAARPPMRS  120
GIGSSWTGDI CSAFCGSNHI PETAAQRCRD AGAALPPERP RRSSTHDGAG TSSSGGSGSN  180
FGASGLPSES ASAHKRKGRE DSDSRSEDAE CEATEETKSS SRRYGSKRRT RAAEVHNLSE  240
RRRRDRINEK MRALQELIPH CNKTDKASIL DEAIEYLKSL QMQVQIMWMT TGMAPMMFPG  300
AHQFMPPMAV GMNSACMPAA QGLSHMSRLP YMNHSMPNHI PLNSSPAMNP MNVANQMQNI  360
QLREASNPFL HPDGWQTVPP QVSGPYASGP QVAQQNQIPK ASASTVLPNS GAEQPPTSDG  420
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226243KRRTRAAEVHNLSERRRR
2239244ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056370.0AK105637.1 Oryza sativa Japonica Group cDNA clone:001-200-E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633322.10.0PREDICTED: transcription factor PIF5 isoform X3
TrEMBLI1PG380.0I1PG38_ORYGL; Uncharacterized protein
STRINGORGLA03G0333400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-32phytochrome interacting factor 3